gmmd.compute.obtain_experiment_params
- gmmd.compute.obtain_experiment_params(base_bv_array, HTO_GEM_ary, sample_num, estimated_total_cell_num, params0=None)
Get parameters for estimation.
- Parameters
base_bv_array (
list) – Binary array with all combinations of cells, generated bygmmd.compute.obtain_base_bv_array().HTO_GEM_ary (
list) – HTO nmumbers array, generated bygmmd.compute.obtain_HTO_GEM_num().sample_num (
int) – Number of samples.estimated_total_cell_num (
int) – Estimated total cell number.params0 (
list, Default =[{drop_num=}80000, {capture_rate=}0.5, {cell_num_ary=}[{estimated_total_cell_num / sample_num}] * {sample_num}) – List of parameters.
- Returns
List of parameters.
- Return type
list